HL_6RM3_036

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

6RM3|1|L50|A|1521, 6RM3|1|L50|U|1522, 6RM3|1|L50|U|1523, 6RM3|1|L50|A|1527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6RM3_036 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.1703

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6RM3|1|L50|U|1518
6RM3|1|L50|U|1519
6RM3|1|L50|U|1520
6RM3|1|L50|A|1521
6RM3|1|L50|U|1522
6RM3|1|L50|U|1523
6RM3|1|L50|A|1524
6RM3|1|L50|A|1525
6RM3|1|L50|A|1526
6RM3|1|L50|A|1527
6RM3|1|L50|A|1528

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LA0

uL2

Chain LJJ

eL37

Chain LNN

MDF2