HL_6RXU_017
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUAUUGGC
- Length
- 9 nucleotides
- Bulged bases
- 6RXU|1|C1|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6RXU_017 not in the Motif Atlas
- Homologous match to HL_4V88_193
- Geometric discrepancy: 0.158
- The information below is about HL_4V88_193
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_82182.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 19
Unit IDs
6RXU|1|C1|G|914
6RXU|1|C1|G|915
6RXU|1|C1|U|916
6RXU|1|C1|A|917
6RXU|1|C1|U|918
6RXU|1|C1|U|919
6RXU|1|C1|G|920
6RXU|1|C1|G|921
6RXU|1|C1|C|922
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CW
- Ribosome biogenesis protein ENP2
- Chain CZ
- Bfr2
- Chain Cf
- 40S ribosomal protein S8
- Chain Ck
- 40S ribosomal protein S11-like protein
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