HL_6RZZ_074
3D structure
- PDB id
- 6RZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6RZZ|1|y|C|84, 6RZZ|1|y|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6RZZ_074 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2973
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6RZZ|1|y|U|69
6RZZ|1|y|G|70
6RZZ|1|y|A|71
6RZZ|1|y|A|72
6RZZ|1|y|U|73
6RZZ|1|y|U|74
6RZZ|1|y|G|75
6RZZ|1|y|C|76
6RZZ|1|y|A|77
6RZZ|1|y|G|78
6RZZ|1|y|A|79
6RZZ|1|y|A|80
6RZZ|1|y|U|81
6RZZ|1|y|U|82
6RZZ|1|y|C|83
6RZZ|1|y|C|84
6RZZ|1|y|G|85
6RZZ|1|y|U|86
6RZZ|1|y|G|87
6RZZ|1|y|A|88
6RZZ|1|y|A|89
Current chains
- Chain y
- 5.8S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L26-A
- Chain Z
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
- Chain r
- Probable metalloprotease ARX1
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