HL_6S05_009
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 6S05|1|A|G|304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S05_009 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.3024
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_00911.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6S05|1|A|G|303
6S05|1|A|G|304
6S05|1|A|U|305
6S05|1|A|A|306
6S05|1|A|A|307
6S05|1|A|A|308
6S05|1|A|U|309
6S05|1|A|U|310
6S05|1|A|C|311
6S05|1|A|C|312
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain N
- 60S ribosomal protein L28
- Chain O
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L36-A
- Chain l
- 60S ribosomal protein L42-A
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