HL_6S05_060

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6S05|1|A|U|2843, 6S05|1|A|A|2845, 6S05|1|A|U|2846

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S05_060 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3768

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6S05|1|A|C|2840
6S05|1|A|G|2841
6S05|1|A|U|2842
6S05|1|A|U|2843
6S05|1|A|C|2844
6S05|1|A|A|2845
6S05|1|A|U|2846
6S05|1|A|A|2847
6S05|1|A|G|2848

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain s

Tyrosine-protein phosphatase YVH1