HL_6S0K_012

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6S0K|1|A|G|386, 6S0K|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0K_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1301

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6S0K|1|A|A|382
6S0K|1|A|C|383
6S0K|1|A|A|384
6S0K|1|A|C|385
6S0K|1|A|G|386
6S0K|1|A|U|387
6S0K|1|A|G|388
6S0K|1|A|G|389
6S0K|1|A|U|390
6S0K|1|A|A|391
6S0K|1|A|U|392

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L28