HL_6S0X_004

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2753

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6S0X|1|A|A|136
6S0X|1|A|G|137
6S0X|1|A|U|138
6S0X|1|A|U|139
6S0X|1|A|A|140
6S0X|1|A|U|141
6S0X|1|A|G|142
6S0X|1|A|U|143

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23