HL_6S0X_025

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GGGCCGGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_025 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3344

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

6S0X|1|A|G|925
6S0X|1|A|G|926
6S0X|1|A|G|927
6S0X|1|A|C|928
6S0X|1|A|C|929
6S0X|1|A|G|937
6S0X|1|A|G|938
6S0X|1|A|U|939
6S0X|1|A|U|940
6S0X|1|A|A|941
6S0X|1|A|C|942

Current chains

Chain A

23S ribosomal RNA

Nearby chains