HL_6S0X_026

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUGAUAAGGU

Length

10 nucleotides

Bulged bases

6S0X|1|A|U|1002, 6S0X|1|A|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_026 not in the Motif Atlas

Geometric match to HL_7LYF_001

Geometric discrepancy: 0.2892

The information below is about HL_7LYF_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

6S0X|1|A|G|998
6S0X|1|A|U|999
6S0X|1|A|G|1000
6S0X|1|A|A|1001
6S0X|1|A|U|1002
6S0X|1|A|A|1003
6S0X|1|A|A|1004
6S0X|1|A|G|1005
6S0X|1|A|G|1006
6S0X|1|A|U|1007

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L16