HL_6S0X_062

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6S0X|1|A|G|2778, 6S0X|1|A|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_062 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1646

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6S0X|1|A|C|2772
6S0X|1|A|U|2773
6S0X|1|A|G|2774
6S0X|1|A|A|2775
6S0X|1|A|A|2776
6S0X|1|A|A|2777
6S0X|1|A|G|2778
6S0X|1|A|C|2779
6S0X|1|A|A|2780
6S0X|1|A|U|2781
6S0X|1|A|C|2782
6S0X|1|A|U|2783
6S0X|1|A|A|2784
6S0X|1|A|A|2785
6S0X|1|A|G|2786

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain H

50S ribosomal protein L13