HL_6S0X_071

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GACGGUCUUGCUGU

Length

14 nucleotides

Bulged bases

6S0X|1|a|U|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_071 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.557

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

6S0X|1|a|G|213
6S0X|1|a|A|214
6S0X|1|a|C|215
6S0X|1|a|G|216
6S0X|1|a|G|217
6S0X|1|a|U|218
6S0X|1|a|C|219
6S0X|1|a|U|220
6S0X|1|a|U|221
6S0X|1|a|G|222
6S0X|1|a|C|223
6S0X|1|a|U|224
6S0X|1|a|G|225
6S0X|1|a|U|226

Current chains

Chain a

16S ribosomal RNA

Nearby chains