HL_6S0X_074

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_074 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1814

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6S0X|1|a|A|328
6S0X|1|a|A|329
6S0X|1|a|C|330
6S0X|1|a|U|331
6S0X|1|a|G|332
6S0X|1|a|A|333
6S0X|1|a|G|334
6S0X|1|a|A|335
6S0X|1|a|C|336
6S0X|1|a|A|337
6S0X|1|a|C|338
6S0X|1|a|G|339
6S0X|1|a|G|340
6S0X|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20