HL_6S0X_091

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6S0X|1|a|A|1103, 6S0X|1|a|A|1104, 6S0X|1|a|G|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_091 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.5716

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6S0X|1|a|G|1100
6S0X|1|a|U|1101
6S0X|1|a|U|1102
6S0X|1|a|A|1103
6S0X|1|a|A|1104
6S0X|1|a|G|1105
6S0X|1|a|U|1106
6S0X|1|a|C|1107

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7