HL_6S0X_092

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

AUUAAGUU

Length

8 nucleotides

Bulged bases

6S0X|1|a|A|1148, 6S0X|1|a|U|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_092 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3419

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6S0X|1|a|A|1144
6S0X|1|a|U|1145
6S0X|1|a|U|1146
6S0X|1|a|A|1147
6S0X|1|a|A|1148
6S0X|1|a|G|1149
6S0X|1|a|U|1150
6S0X|1|a|U|1151

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9