HL_6S0X_097

3D structure

PDB id

6S0X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

UAACCUUUUAGGAG

Length

14 nucleotides

Bulged bases

6S0X|1|a|A|1456, 6S0X|1|a|A|1457, 6S0X|1|a|C|1458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0X_097 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.337

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6S0X|1|a|U|1455
6S0X|1|a|A|1456
6S0X|1|a|A|1457
6S0X|1|a|C|1458
6S0X|1|a|C|1459
6S0X|1|a|U|1460
6S0X|1|a|U|1461
6S0X|1|a|U|1462
6S0X|1|a|U|1463
6S0X|1|a|A|1464
6S0X|1|a|G|1465
6S0X|1|a|G|1466
6S0X|1|a|A|1467
6S0X|1|a|G|1468

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20