HL_6S0Z_057

3D structure

PDB id

6S0Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22) in complex with erythromycin.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S0Z_057 not in the Motif Atlas

Geometric match to HL_3MJA_001

Geometric discrepancy: 0.3846

The information below is about HL_3MJA_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_41019.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6S0Z|1|A|C|2431
6S0Z|1|A|G|2432
6S0Z|1|A|C|2433
6S0Z|1|A|A|2434
6S0Z|1|A|U|2435
6S0Z|1|A|G|2436
6S0Z|1|A|G|2437
6S0Z|1|A|A|2438
6S0Z|1|A|A|2439
6S0Z|1|A|G|2440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15