HL_6S12_009

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6S12|1|A|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_009 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.2132

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

6S12|1|A|C|348
6S12|1|A|U|349
6S12|1|A|G|350
6S12|1|A|G|351
6S12|1|A|A|352
6S12|1|A|A|353
6S12|1|A|A|354
6S12|1|A|G|355

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L24