3D structure

PDB id
6S12 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCUCGUC
Length
7 nucleotides
Bulged bases
6S12|1|A|C|1362, 6S12|1|A|U|1366
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6S12_032 not in the Motif Atlas
Homologous match to HL_7A0S_033
Geometric discrepancy: 0.1947
The information below is about HL_7A0S_033
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_57176.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

6S12|1|A|G|1361
6S12|1|A|C|1362
6S12|1|A|U|1363
6S12|1|A|C|1364
6S12|1|A|G|1365
6S12|1|A|U|1366
6S12|1|A|C|1367

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L17
Chain Q
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0824 s