HL_6S12_034

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

6S12|1|A|U|1433, 6S12|1|A|U|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_034 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2576

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6S12|1|A|G|1426
6S12|1|A|U|1427
6S12|1|A|U|1428
6S12|1|A|G|1429
6S12|1|A|A|1430
6S12|1|A|U|1431
6S12|1|A|A|1432
6S12|1|A|U|1433
6S12|1|A|U|1434
6S12|1|A|C|1435

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23