HL_6S12_035

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

6S12|1|A|C|1536, 6S12|1|A|U|1540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_035 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.21

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6S12|1|A|G|1535
6S12|1|A|C|1536
6S12|1|A|A|1537
6S12|1|A|A|1538
6S12|1|A|A|1539
6S12|1|A|U|1540
6S12|1|A|C|1541

Current chains

Chain A

23S ribosomal RNA

Nearby chains