HL_6S12_038

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

6S12|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_038 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2361

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6S12|1|A|A|1673
6S12|1|A|U|1674
6S12|1|A|G|1675
6S12|1|A|A|1676
6S12|1|A|G|1677
6S12|1|A|A|1678
6S12|1|A|A|1679
6S12|1|A|U|1680
6S12|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains