HL_6S12_045

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUAAC

Length

7 nucleotides

Bulged bases

6S12|1|A|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_045 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3854

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6S12|1|A|G|1937
6S12|1|A|U|1938
6S12|1|A|A|1939
6S12|1|A|U|1944
6S12|1|A|A|1945
6S12|1|A|A|1946
6S12|1|A|C|1947

Current chains

Chain A

23S ribosomal RNA

Nearby chains