HL_6S12_046

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6S12|1|A|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_046 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1595

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6S12|1|A|G|1976
6S12|1|A|G|1977
6S12|1|A|U|1978
6S12|1|A|A|1979
6S12|1|A|A|1980
6S12|1|A|G|1981
6S12|1|A|U|1982
6S12|1|A|U|1983
6S12|1|A|C|1984

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L14