HL_6S12_048

3D structure

PDB id

6S12 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 50S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCGCUAGC

Length

8 nucleotides

Bulged bases

6S12|1|A|C|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S12_048 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3083

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6S12|1|A|G|2169
6S12|1|A|C|2170
6S12|1|A|G|2171
6S12|1|A|C|2172
6S12|1|A|U|2173
6S12|1|A|A|2174
6S12|1|A|G|2175
6S12|1|A|C|2176

Current chains

Chain A

23S ribosomal RNA

Nearby chains