3D structure

PDB id
6S13 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.58 Å

Loop

Sequence
CUGGAAAG
Length
8 nucleotides
Bulged bases
6S13|1|A|A|354
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6S13_009 not in the Motif Atlas
Homologous match to HL_4WF9_010
Geometric discrepancy: 0.277
The information below is about HL_4WF9_010
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

6S13|1|A|C|348
6S13|1|A|U|349
6S13|1|A|G|350
6S13|1|A|G|351
6S13|1|A|A|352
6S13|1|A|A|353
6S13|1|A|A|354
6S13|1|A|G|355

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L24

Coloring options:


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