HL_6S13_013

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6S13|1|A|G|457

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.4595

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6S13|1|A|G|456
6S13|1|A|G|457
6S13|1|A|A|458
6S13|1|A|C|459
6S13|1|A|C|460
6S13|1|A|A|461
6S13|1|A|U|462
6S13|1|A|C|463

Current chains

Chain A

23S ribosomal RNA

Nearby chains