HL_6S13_049

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GCGCUAGC

Length

8 nucleotides

Bulged bases

6S13|1|A|C|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_049 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1577

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6S13|1|A|G|2169
6S13|1|A|C|2170
6S13|1|A|G|2171
6S13|1|A|C|2172
6S13|1|A|U|2173
6S13|1|A|A|2174
6S13|1|A|G|2175
6S13|1|A|C|2176

Current chains

Chain A

23S ribosomal RNA

Nearby chains