HL_6S13_050

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CUUAUCG

Length

7 nucleotides

Bulged bases

6S13|1|A|U|2238, 6S13|1|A|U|2240

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_050 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3042

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6S13|1|A|C|2236
6S13|1|A|U|2237
6S13|1|A|U|2238
6S13|1|A|A|2239
6S13|1|A|U|2240
6S13|1|A|C|2241
6S13|1|A|G|2242

Current chains

Chain A

23S ribosomal RNA

Nearby chains