HL_6S13_054

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

GUGUAAAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_054 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3265

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6S13|1|A|G|2350
6S13|1|A|U|2351
6S13|1|A|G|2352
6S13|1|A|U|2353
6S13|1|A|A|2354
6S13|1|A|A|2355
6S13|1|A|A|2356
6S13|1|A|G|2357
6S13|1|A|G|2358
6S13|1|A|C|2359

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain F

50S ribosomal protein L5

Chain U

50S ribosomal protein L27