HL_6S13_076

3D structure

PDB id

6S13 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.58 Å

Loop

Sequence

CUGAGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S13_076 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3498

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

6S13|1|a|C|303
6S13|1|a|U|304
6S13|1|a|G|305
6S13|1|a|A|306
6S13|1|a|G|307
6S13|1|a|A|308
6S13|1|a|G|309
6S13|1|a|G|310

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain e

30S ribosomal protein S5

Chain q

30S ribosomal protein S17