HL_6S47_004

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6S47|1|AA|U|133, 6S47|1|AA|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_004 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.1987

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6S47|1|AA|C|132
6S47|1|AA|U|133
6S47|1|AA|U|134
6S47|1|AA|C|135
6S47|1|AA|G|136

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AP

60S ribosomal protein L15-A

Chain Aj

60S ribosomal protein L35-A