HL_6S47_020

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6S47|1|AA|U|879, 6S47|1|AA|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0723

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6S47|1|AA|A|876
6S47|1|AA|C|877
6S47|1|AA|G|878
6S47|1|AA|U|879
6S47|1|AA|G|880
6S47|1|AA|C|881
6S47|1|AA|A|882
6S47|1|AA|A|883
6S47|1|AA|A|884
6S47|1|AA|U|885

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L3

Chain AR

60S ribosomal protein L17-A

Chain Al

60S ribosomal protein L37-A