HL_6S47_024

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1425

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6S47|1|AA|C|1076
6S47|1|AA|U|1077
6S47|1|AA|U|1078
6S47|1|AA|A|1079
6S47|1|AA|A|1080
6S47|1|AA|U|1081
6S47|1|AA|U|1082
6S47|1|AA|G|1083

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L5

Chain AV

60S ribosomal protein L21-A

Chain Ad

60S ribosomal protein L29