HL_6S47_027

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

6S47|1|AA|G|1242, 6S47|1|AA|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_027 not in the Motif Atlas

Geometric match to HL_5TBW_027

Geometric discrepancy: 0.2432

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6S47|1|AA|C|1239
6S47|1|AA|A|1240
6S47|1|AA|U|1241
6S47|1|AA|G|1242
6S47|1|AA|G|1243
6S47|1|AA|A|1244
6S47|1|AA|A|1245
6S47|1|AA|G|1246
6S47|1|AA|U|1247
6S47|1|AA|C|1248
6S47|1|AA|G|1249

Current chains

Chain AA

28S ribosomal RNA

Nearby chains