HL_6S47_028

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.4864

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6S47|1|AA|U|1267
6S47|1|AA|G|1268
6S47|1|AA|U|1269
6S47|1|AA|A|1270
6S47|1|AA|A|1271
6S47|1|AA|C|1272
6S47|1|AA|A|1273
6S47|1|AA|A|1274

Current chains

Chain AA

28S ribosomal RNA

Nearby chains