HL_6S47_041

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

6S47|1|AA|C|1846, 6S47|1|AA|G|1848, 6S47|1|AA|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_041 not in the Motif Atlas

Homologous match to HL_8C3A_041

Geometric discrepancy: 0.0654

The information below is about HL_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

6S47|1|AA|C|1844
6S47|1|AA|G|1845
6S47|1|AA|C|1846
6S47|1|AA|A|1847
6S47|1|AA|G|1848
6S47|1|AA|C|1849
6S47|1|AA|A|1850
6S47|1|AA|G|1851

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L4-A

Chain AR

60S ribosomal protein L17-A

Chain Al

60S ribosomal protein L37-A

Chain An

60S ribosomal protein L39