HL_6S47_046

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

6S47|1|AA|A|2138, 6S47|1|AA|A|2139, 6S47|1|AA|U|2140, 6S47|1|AA|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_046 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.0841

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

6S47|1|AA|U|2135
6S47|1|AA|C|2136
6S47|1|AA|U|2137
6S47|1|AA|A|2138
6S47|1|AA|A|2139
6S47|1|AA|U|2140
6S47|1|AA|U|2141
6S47|1|AA|A|2142
6S47|1|AA|A|2143
6S47|1|AA|A|2144
6S47|1|AA|A|2145

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L2-A

Chain Al

60S ribosomal protein L37-A