HL_6S47_049

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6S47|1|AA|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_049 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1131

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6S47|1|AA|G|2253
6S47|1|AA|U|2254
6S47|1|AA|A|2255
6S47|1|AA|A|2256
6S47|1|AA|C|2257
6S47|1|AA|U|2258
6S47|1|AA|A|2259
6S47|1|AA|U|2260
6S47|1|AA|G|2261
6S47|1|AA|A|2262
6S47|1|AA|C|2263

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain Bf

40S ribosomal protein S30-A