HL_6S47_050

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6S47|1|AA|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0676

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6S47|1|AA|U|2292
6S47|1|AA|C|2293
6S47|1|AA|U|2294
6S47|1|AA|A|2295
6S47|1|AA|A|2296
6S47|1|AA|U|2297
6S47|1|AA|U|2298
6S47|1|AA|A|2299
6S47|1|AA|G|2300

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L23-A

Chain BA

Small subunit ribosomal RNA; SSU rRNA