HL_6S47_075
3D structure
- PDB id
- 6S47 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6S47|1|AC|C|84, 6S47|1|AC|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6S47_075 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.1579
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6S47|1|AC|U|69
6S47|1|AC|G|70
6S47|1|AC|A|71
6S47|1|AC|A|72
6S47|1|AC|U|73
6S47|1|AC|U|74
6S47|1|AC|G|75
6S47|1|AC|C|76
6S47|1|AC|A|77
6S47|1|AC|G|78
6S47|1|AC|A|79
6S47|1|AC|A|80
6S47|1|AC|U|81
6S47|1|AC|U|82
6S47|1|AC|C|83
6S47|1|AC|C|84
6S47|1|AC|G|85
6S47|1|AC|U|86
6S47|1|AC|G|87
6S47|1|AC|A|88
6S47|1|AC|A|89
Current chains
- Chain AC
- 5.8S ribosomal RNA
Nearby chains
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- 60S ribosomal protein L26-A
- Chain Aj
- 60S ribosomal protein L35-A
- Chain Al
- 60S ribosomal protein L37-A
- Chain An
- 60S ribosomal protein L39
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