HL_6S47_083

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6S47|1|BA|U|249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_083 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1225

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6S47|1|BA|G|243
6S47|1|BA|A|244
6S47|1|BA|U|245
6S47|1|BA|G|246
6S47|1|BA|A|247
6S47|1|BA|U|248
6S47|1|BA|U|249
6S47|1|BA|C|250

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BF

40S ribosomal protein S4-A

Chain BM

40S ribosomal protein S11-A