HL_6S47_095

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_095 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2889

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6S47|1|BA|A|829
6S47|1|BA|U|830
6S47|1|BA|U|831
6S47|1|BA|U|832
6S47|1|BA|U|833
6S47|1|BA|G|834
6S47|1|BA|U|835
6S47|1|BA|U|836
6S47|1|BA|G|837
6S47|1|BA|G|838
6S47|1|BA|U|839
6S47|1|BA|U|840
6S47|1|BA|U|841
6S47|1|BA|C|842
6S47|1|BA|U|843

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BH

40S ribosomal protein S6-A

Chain BM

40S ribosomal protein S11-A