HL_6S47_102

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6S47|1|BA|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_102 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1074

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6S47|1|BA|G|1188
6S47|1|BA|A|1189
6S47|1|BA|C|1190
6S47|1|BA|U|1191
6S47|1|BA|C|1192
6S47|1|BA|A|1193
6S47|1|BA|A|1194
6S47|1|BA|C|1195
6S47|1|BA|A|1196
6S47|1|BA|C|1197

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BR

40S ribosomal protein S16-A

Chain BV

40S ribosomal protein S20

Chain Be

40S ribosomal protein S29-A