HL_6S47_103

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6S47|1|BA|G|1243, 6S47|1|BA|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_103 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1689

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6S47|1|BA|A|1238
6S47|1|BA|U|1239
6S47|1|BA|U|1240
6S47|1|BA|G|1241
6S47|1|BA|A|1242
6S47|1|BA|G|1243
6S47|1|BA|A|1244
6S47|1|BA|G|1245
6S47|1|BA|C|1246
6S47|1|BA|U|1247

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BQ

40S ribosomal protein S15

Chain Be

40S ribosomal protein S29-A

Chain Bg

Ubiquitin-40S ribosomal protein S31