HL_6S47_105

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6S47|1|BA|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_105 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.0902

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6S47|1|BA|C|1309
6S47|1|BA|U|1310
6S47|1|BA|U|1311
6S47|1|BA|A|1312
6S47|1|BA|A|1313
6S47|1|BA|U|1314
6S47|1|BA|U|1315
6S47|1|BA|G|1316

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BS

40S ribosomal protein S17-A