HL_6S47_106

3D structure

PDB id

6S47 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6S47_106 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.5308

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6S47|1|BA|C|1359
6S47|1|BA|A|1360
6S47|1|BA|U|1361
6S47|1|BA|U|1362
6S47|1|BA|U|1363
6S47|1|BA|G|1364

Current chains

Chain BA

18S rRNA (1707-MER)

Nearby chains

Chain BG

Rps5p

Chain BR

40S ribosomal protein S16-A

Chain BU

40S ribosomal protein S19-A

Chain Bi

[NU+] prion formation protein 1