HL_6SGC_007
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 6SGC|1|54|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_007 not in the Motif Atlas
- Homologous match to HL_5TBW_001
- Geometric discrepancy: 0.0897
- The information below is about HL_5TBW_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36430.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6SGC|1|54|U|37
6SGC|1|54|A|38
6SGC|1|54|A|39
6SGC|1|54|G|40
6SGC|1|54|C|41
6SGC|1|54|A|42
6SGC|1|54|U|43
6SGC|1|54|A|44
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain L2
- eL13
- Chain N2
- Ribosomal protein L15
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain o2
- eL42
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