HL_6SGC_012

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

6SGC|1|54|U|224, 6SGC|1|54|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_012 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.1045

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6SGC|1|54|C|222
6SGC|1|54|G|223
6SGC|1|54|U|224
6SGC|1|54|G|225
6SGC|1|54|G|226

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain C2

uL4

Chain Y2

Ribosomal protein L26