HL_6SGC_021

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6SGC|1|54|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_021 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.072

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6SGC|1|54|U|1317
6SGC|1|54|C|1318
6SGC|1|54|U|1319
6SGC|1|54|U|1320
6SGC|1|54|G|1321
6SGC|1|54|A|1322
6SGC|1|54|A|1323
6SGC|1|54|A|1324
6SGC|1|54|C|1325
6SGC|1|54|A|1326

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain a2

Ribosomal_L18e/L15P domain-containing protein

Chain e2

eL32