HL_6SGC_028

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6SGC|1|54|A|1630, 6SGC|1|54|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_028 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0836

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|G|1627
6SGC|1|54|C|1628
6SGC|1|54|G|1629
6SGC|1|54|A|1630
6SGC|1|54|A|1631
6SGC|1|54|A|1632
6SGC|1|54|G|1633
6SGC|1|54|A|1634
6SGC|1|54|C|1635

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A2

Ribosomal protein L8

Chain N2

Ribosomal protein L15

Chain j2

Ribosomal protein L37